Research
Publications
A Temporal Single-Cell Multi-Omics Atlas of Murine Pancreatic Islet Remodeling During Hyperglycaemia Progression
Simran Singh, Musale Krushna Pavan, Luiz F. Barella, Jayesh Telang, Ajita Shree, Shruti Agarwal, Ayush Goel, Saahiba I Thaleshwar, Jurgen Wess, Hamim Zafar
bioRxiv, 2025scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier
Ajita Shree, Musale Krushna Pavan, Hamim Zafar
Nature Communications, 2023
Talks
February 2026: Delivered a talk on “Deep generative models for single-cell and spatial genomics” at the Department of Computer Science and Engineering, IIT Delhi
January 2026: Delivered a Lightening talk at ANRF-PAIR Conference on Cancer Genomics, Diagnostics and Therapeutics, IIT Kanpur
April 2025: Delivered Lightening talk and Poster at RECOMB 2025, Seoul, South Korea
November 2023: Delivered a Lightening talk and Poster on scDREAMER at the Mehta Family Center for Engineering & Medicine research symposium.
June-July 2023: Presented Poster on “Supervised integration of single-cell datasets using hierarchical deep-generative model paired with cell-type classifier” at ISMB/ECCB 2023, Lyon, France and Symposium on Big Data Algorithms for Biology, IISC, Bengaluru
June-July 2022: Presented Lightening Talk and Poster on scDREAMER: atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier in MLCSB COSI at ISMB 2022, Washington, USA and at Single Cell Biology 2022, Cambridge, UK, both presented online.